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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909996.1_cds_XP_016460101.1_53554
CDS Infomation

[gene=LOC107783626] [db_xref=GeneID:107783626] [protein=nuclear pore complex protein NUP85-like] [protein_id=XP_016460101.1] [location=join(45620..46008,47553..47655,47756..47866,47971..48054,48443..48514,48639..48695,49765..49884,49953..50153,50302..50412,50497..50534,50644..50800,51504..51605,51742..51798,51943..52089,52941..53011,53116..53203,53511..53567,54900..55094)] [gbkey=CDS]
Sequence

ATGCCAGGTTTGACGTCAGAGTCCGACGACCTTGCAATGGTTCCAGTATCGCCGGAGCCG
GAAAATCATCCGGCGGTCATCTATCCTCTCCATCACGGTCTCAAATCCCCGATTCATCGA
CTCTCCATTTCCTGGGCGCGTGGCAACACTCTCCAAGTCTCAGTTCTCGGGAAGCCTCAG
TCGGACATGGCGACTGACGTAGACGGCAGCGAGGGTGGTGGCGGTAGAGTGGTGGAGGTG
AAGCTGAGTAACAGCGGAGATGAGGAAGTTGATGCCGCAAGATGGAGGAGAATAGCTTAC
GGTTCCGTCATTCCTTTCGCGCTTCTTCAGAGCCGCAAGCATTCTCTGTCTGCTATGTCG
TTGGATAACCCTCCTTACAAGGCACAGTGGTGGGAGCATGTCATAGAGTACAGCAAAGAG
ATAAATTCTCTGCTCGGTGATCGAAAATCACCTCCTAGATCAATTATTGAAGATCCCAAG
TCGGTAGTAATTGAAACTGCAGAGCCGATGTGTTTGAAAGCTGCGTGGGAGCTTCTGGAG
ATATTTTATGTAGACAAGCAATCTCAATCCTGGATTCCTGAACGGTTGCTAGATTGGTTA
GCTGACTACGATCCTTTATTCTCGGGAACTGTACCAACTATTCATTCAAAGTTTGTGGAT
TTTCAGCAGGAACTTGCTGGCGTACAGGTTGTTGAAGAAGATCCTAACTACTGGGAAGCA
ATAGCATCAGCATTGTCAGTTGGCTGGCTGGGAACTGTGGTGAAATTGCTGCGCTTGCAT
GGTTCTTACCGGTTTGATCAGTTAGCTAGCCGTGAGACAGAGAATGGACTGGTTGAAGCA
GTTGCTCTTCTTATATCCAAGATGCCTAGAATGCGTCCTAATCTGAGAGAAGAAAATTTA
GGCGAGTGTTACAAAACCAAGCCTGATTTCATGAAGGCTTGGGAGAAGTGGAGGGCACAA
ATAACTAAACTGGACTGCAGTTCGTACTGGCTTCAATGTGATCACCAGCAGACTAGAGAA
GGGCTAAAAAATTTGATCCAGATCATGTTGGGAAATCCTAGTGTTCTATCAAATGCAACT
TTCAACTGGATGGAGCTTTTTATATCCCATTTCTTGTACGTTAGGCCATTTACTGCGGGT
CTAGAGAGCATGTACAATTTAGCTCAGAAGTGCATGCAATTAAAACCAATTTCCAGCCCC
CATAAGCTGTTTGGTCTTGTACTTGGCATTCTTGGAGAAAATACTGAGGTTGTTCTAGCA
GAGTGCTCAAGATCATTTGGCCCATGGATGATGGCACATGCTGTAGAGTTGTTGACAGCT
GGGAGCACTCATGCGGAAATTCTTTTGCATGAAGAGCAGTCCAAACTGGGGGGAATCAGC
ATAGAAGAGCTCCATAAACTTGTATATGCACAAGTTCTGTCTTCCCATGCGTTCACATGG
CAAATTGCTCCAATATACTTGACTTCATGCATAAAACAAGGGATTGGATTGTTGGAGAAT
TTGCTTTACAAGCAGCCTGTACAGCATAGTCAAATTCTGTTAAAGAGTATAGAGATCTGC
CGTCTGTATGAACTTGACACCATAAGTTCAAACATAATGAGGATTGCTGGTATGCATCAC
TGGAAACATGGGAGAAAAGGCTCTGGTGTCTTTTGGCTGCAGCAAGCTCGAGATGAATTT
CGTTTAAACAGAATTGCCAAGCAATTATTTGATTTCGTGGGGAAGTCAGTTTCTGATGAA
GGATTCAAGCAATGGGAAGGTCTCATAGAGTTGCTGGGTTCTGAGTCTAGAACTGCTGGC
AGTCTTGAGTTTCTGAACAAGTACAGGGATTTTAGGAGATCCCTGCTGCAGGTTCATGGT
GATACACCCACTGATGGTGCTCGTAATGCAGCTGAAGCTCTCGTCTCTCTCATGAAAAAT
CCTTCCACGCCTCAACGCTTTTGGTTACCTCTTCTATATGATTCATTGAAATTGTTAAAC
TGGCAGGAGCGACCTTTGATTAATGTCTCTCAAACTCAGCTTCTCTTGAATAAACTGCAA
GAGTTGTCCATGGCAAGATTGAGGCCAGACTTTGTTGAAGCTGACTTGCCATCTGATTCA
TTAAGCTCTATCAGACTGGCTCTTGCCACTAACCTGGGTCGTGCAATCCTTGAAGAGTGA

Peptide Sequence

PEP ID

XP_016460101.1
PEP Infomation

PREDICTED: nuclear pore complex protein NUP85-like [Nicotiana tabacum]
Sequence

MPGLTSESDDLAMVPVSPEPENHPAVIYPLHHGLKSPIHRLSISWARGNTLQVSVLGKPQ
SDMATDVDGSEGGGGRVVEVKLSNSGDEEVDAARWRRIAYGSVIPFALLQSRKHSLSAMS
LDNPPYKAQWWEHVIEYSKEINSLLGDRKSPPRSIIEDPKSVVIETAEPMCLKAAWELLE
IFYVDKQSQSWIPERLLDWLADYDPLFSGTVPTIHSKFVDFQQELAGVQVVEEDPNYWEA
IASALSVGWLGTVVKLLRLHGSYRFDQLASRETENGLVEAVALLISKMPRMRPNLREENL
GECYKTKPDFMKAWEKWRAQITKLDCSSYWLQCDHQQTREGLKNLIQIMLGNPSVLSNAT
FNWMELFISHFLYVRPFTAGLESMYNLAQKCMQLKPISSPHKLFGLVLGILGENTEVVLA
ECSRSFGPWMMAHAVELLTAGSTHAEILLHEEQSKLGGISIEELHKLVYAQVLSSHAFTW
QIAPIYLTSCIKQGIGLLENLLYKQPVQHSQILLKSIEICRLYELDTISSNIMRIAGMHH
WKHGRKGSGVFWLQQARDEFRLNRIAKQLFDFVGKSVSDEGFKQWEGLIELLGSESRTAG
SLEFLNKYRDFRRSLLQVHGDTPTDGARNAAEALVSLMKNPSTPQRFWLPLLYDSLKLLN
WQERPLINVSQTQLLLNKLQELSMARLRPDFVEADLPSDSLSSIRLALATNLGRAILEE

Transcript Sequence

Gene sequence data has not been registered.